PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0429100.1
Common NameFUL1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 371aa    MW: 40549.4 Da    PI: 7.882
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0429100.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.81.5e-55241521129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL kkv +++++  ++i evd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++s
  Lj3g3v0429100.1  24 LPPGFRFHPTDEELITYYLLKKVLDSNFTG-KAIVEVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYS 116
                      79*************************999.88***************99999****************************************9 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      + + +lvg+kktLvfy+grapkgek++Wvmheyrle
  Lj3g3v0429100.1 117 SkTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 152
                      745567****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6318176IPR003441NAC domain
PROSITE profilePS5100560.05324176IPR003441NAC domain
PfamPF023651.0E-2825151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010160Biological Processformation of organ boundary
GO:0010223Biological Processsecondary shoot formation
GO:0048366Biological Processleaf development
GO:0048504Biological Processregulation of timing of organ formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDSYHHHHQI HHQSFDSNNT DASLPPGFRF HPTDEELITY YLLKKVLDSN FTGKAIVEVD  60
LNKCEPWELP GKAKMGEKEW YFFSLRDRKY PTGLRTNRAT EAGYWKATGK DREIYSSKTC  120
SLVGMKKTLV FYRGRAPKGE KSNWVMHEYR LEGKFAYHYL SRSSKDEWVI SRVFQKNTVG  180
SGGAAVSGAS GGSKKGMRAS TGGSSSMSLC GSAYEPGSPA SSSIYLPPLM ESSPYTATSS  240
AATSAALFKD GDSFDSVKRE HVSCFSTINN AAGNNNSFSG GGFDLAPLAV DPFSRFQRNV  300
VGVSAFPSLR SLQENLQMPF FFSPPAAQPM NADVAGCGNV GNWPVMEEHV VSDGGSGMPV  360
GASELDCMWG Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B2e-522017813167NAC domain-containing protein 19
4dul_A2e-522017813167NAC domain-containing protein 19
1ut7_B2e-522017813167NO APICAL MERISTEM PROTEIN
1ut7_A2e-522017813167NO APICAL MERISTEM PROTEIN
1ut4_B2e-522017813167NO APICAL MERISTEM PROTEIN
1ut4_A2e-522017813167NO APICAL MERISTEM PROTEIN
3swp_D2e-522017816170NAC domain-containing protein 19
3swp_C2e-522017816170NAC domain-containing protein 19
3swp_B2e-522017816170NAC domain-containing protein 19
3swp_A2e-522017816170NAC domain-containing protein 19
3swm_D2e-522017816170NAC domain-containing protein 19
3swm_C2e-522017816170NAC domain-containing protein 19
3swm_B2e-522017816170NAC domain-containing protein 19
3swm_A2e-522017816170NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00562DAPTransfer from AT5G53950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104030.0AP010403.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjB14E23, BM1673, complete sequence.
GenBankAP0104040.0AP010404.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT02M11, TM1705, complete sequence.
GenBankJX9157630.0JX915763.1 Lotus japonicus FUL1 (FUL1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541166.11e-170PREDICTED: protein CUP-SHAPED COTYLEDON 2-like
SwissprotO040171e-113NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2
TrEMBLL0GDU30.0L0GDU3_LOTJA; FUL1
STRINGGLYMA12G26190.11e-169(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36893463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.11e-108NAC family protein
Publications ? help Back to Top
  1. Wang Z, et al.
    Multiple components are integrated to determine leaf complexity in Lotus japonicus.
    J Integr Plant Biol, 2013. 55(5): p. 419-33
    [PMID:23331609]